Rainy Weather Headaches: Is It the Rain or the Pressure?
Almost certainly the pressure, not the rain. Rain is a consequence of rising air in a low-pressure system, not a cause of anything physiological. The barometric fall that produces the rain typically begins 12 to 36 hours before the first drops, and that is the window in which most people who report rain headaches actually experience symptoms. If your headache reliably starts before the rain rather than during it, you have your answer — you are responding to the pressure change, and the rain is simply the most visible marker of a system that was already affecting you.
The distinction is not academic. It determines whether a forecast is useful to you and whether anything you do in advance can help.